vcf_row = [ row['chr'], row['pos'], '.', row['ref'], row['alt'], '100', 'PASS', '.', '.' ] vcf_data.append(vcf_row) with open(‘output.vcf’, ‘w’) as f:
In the world of data exchange and storage, various formats serve different purposes. JSON (JavaScript Object Notation) and VCF (Variant Call Format) are two such formats that are widely used in different domains. JSON is a lightweight, text-based format for exchanging data between web servers, web applications, and mobile apps, while VCF is a file format used in bioinformatics and genomics to store genetic variation data. json to vcf
JSON is a lightweight, text-based format that represents data as key-value pairs, arrays, and objects. A JSON object might look like this: vcf_row = [ row['chr'], row['pos'], '
Before diving into the conversion process, let’s briefly review the JSON and VCF formats: JSON is a lightweight, text-based format that represents
f.write('#CHROM POS
"name": "John", "age": 30, "variants": [ "chr": "chr1", "pos": 100, "ref": "A", "alt": "T" ]